C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27A, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075382 Rpl27a-ps1-201 ENSMUSG00000061488 10090 + 10:61309830-61310276 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000075382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000075382 0.123±0.01 0.179±0.00 0.563±0.45 0.700±0.34 0.448±0.30 0.180±0.00 0.108±0.00 0.106±0.01 0.547±0.59 0.417±0.04 0.371±0.00 0.442±0.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 556
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 412
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 248
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 457
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 4e-19 99
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 3e-40 169
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 3e-21 106
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 553
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 381
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 5e-19 99

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