C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 3d
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321253 TUBA3D-001 ENSG00000075886 9606 + 2:131476093-131482934 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321253
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321253 0.075±0.00 0.242±0.00 0.209±0.00 0.049±0.00 10.878±0.00 0.035±0.00 0.045±0.00 0.087±0.05 0.014±0.00 0.039±0.00 0.645±0.48 95.495±55.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1807
ENSMUST00000088246 Tuba3a-201 protein_coding Mus_musculus 0 1797
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1428
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1415
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1406
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1391
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1343
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1282
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1277
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1275
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1266
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1251
ENSDART00000062671 tuba8l-201 protein_coding Danio_rerio 0 1122
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 1096
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 1046
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1000
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 926
ENSDART00000115157 tuba4l-201 protein_coding Danio_rerio 0 798
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 508
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 305
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 255
ENSMUST00000121141 Gm3928-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000117552 Gm21998-001 processed_pseudogene Mus_musculus 9.94922e-44 182

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