C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330423 TUBA8-001 ENSG00000183785 9606 + 22:18110793-18131731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000330423
Transcript ID Muscle
ENST00000330423 4.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000240 CIL_000240_0001 CGP 22:17787649-18131138
CIL_0005EU CIL_0005EU_0001 CGP 22:18077920-18146554
CIL_0005EW CIL_0005EW_0001 CGP 22:18110331-18177397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 1816
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1090
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1085
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1061
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1053
ENSMUST00000088246 Tuba3a-201 protein_coding Mus_musculus 0 1037
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1002
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 996
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 968
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 968
ENSDART00000053304 protein_coding Danio_rerio 0 941
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 891
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 813
ENSMUST00000117877 Gm11873-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 503
ENSMUST00000120657 Gm12201-001 processed_pseudogene Mus_musculus 0 418
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 398
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 281
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 250
ENSMUST00000121141 Gm3928-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000117552 Gm21998-001 processed_pseudogene Mus_musculus 0 207

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