C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19, pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116122 Rps19-ps7-001 ENSMUSG00000080006 10090 - 2:140073032-140073469 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000116122
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000116122 0.119±0.00 0.167±0.11 0.129±0.00 0.255±0.10 0.434±0.00 0.120±0.00 0.119±0.01 0.178±0.15 0.084±0.00 0.318±0.20 0.104±0.05 0.163±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DC CIL_0002DC_0002 CGP 2:139833480-140170564

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 593
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 436
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 399
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 396
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 534
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 610
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 331
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 257
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 610
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 329
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 257

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