C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611893 RPS27A-201 ENSG00000143947 9606 + 2:55232405-55234301 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartMuscleOvaryENST00000611893
Transcript ID Bladder Heart Muscle Ovary
ENST00000611893 37.055±0.00 14.491±0.00 41.500±0.00 112.839±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z4 CIL_0000Z4_0002 CGP 2:55231903-55269347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 342
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 302
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 200
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000117540 Gm13428-001 processed_pseudogene Mus_musculus 5e-39 165
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 2e-37 159
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 2e-18 97

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