C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453803 RPS27AP3-001 ENSG00000226144 9606 + 20:37049254-37049707 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLungOvaryENST00000453803
Transcript ID Adipose Brain Colon Lung Ovary
ENST00000453803 0.115±0.00 0.118±0.00 0.028±0.00 0.028±0.00 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0001 CGP 20:36890229-37095995
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 503
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 503
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000117559 Gm13215-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 350
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 324
ENSMUST00000191424 RP24-388H6.1-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000117540 Gm13428-001 processed_pseudogene Mus_musculus 1e-28 130

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