C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12987
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118562 Gm12987-001 ENSMUSG00000082711 10090 - 4:136584172-136584660 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000118562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000118562 0.298±0.00 0.242±0.08 0.071±0.00 0.443±0.14 0.265±0.09 0.274±0.09 0.282±0.19 0.116±0.03 0.124±0.13 0.135±0.01 0.986±0.46 0.275±0.05 0.145±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000208 CIL_000208_0002 CGP 4:136469761-136602723

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 357
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 296
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 289
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 340
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 246
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 357
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 357
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 357
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 2e-34 150
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 1e-35 154
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 287
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 202
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.0000000004 69
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 294
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 357
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 346
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 357
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 193

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