C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11533
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120287 Gm11533-001 ENSMUSG00000081860 10090 + 11:97037007-97037483 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungOvaryPlacentaTestisENSMUST00000120287
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120287 0.250±0.03 0.534±0.00 0.033±0.01 0.270±0.00 0.118±0.01 0.024±0.01 0.214±0.09 0.453±0.21 0.153±0.00 1.956±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 337
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 291
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 285
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 287
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 200
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 337
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 337
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 337
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 3e-36 156
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 3e-37 159
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 270
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 202
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.00000002 64
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 265
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 337
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 327
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 337
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 195

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