C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465069 RPL29P25-001 ENSG00000241286 9606 - 12:110841538-110842387 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000465069
Transcript ID Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000465069 0.197±0.00 0.349±0.00 0.020±0.00 0.138±0.00 0.116±0.00 0.340±0.00 0.092±0.00 0.043±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0001 VISTA 12:110628804-111231731
CIL_000903 CIL_000903_0001 VISTA 12:110757593-111358448

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 230
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 213
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 213
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 211
ENSMUST00000117972 Gm8482-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000147424 4931440P22Rik-003 processed_transcript Mus_musculus 0 207
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 206
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 202
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000120700 Gm12723-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 196
ENSMUST00000119411 Gm13921-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 195
ENSMUST00000121784 Gm13586-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 193
ENSMUST00000080945 Gm6887-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 189
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 189
ENSMUST00000120582 Gm15467-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 2e-39 167
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 7e-39 165
ENSMUST00000119890 Gm8832-001 processed_pseudogene Mus_musculus 3e-37 159
ENSMUST00000116162 Gm15602-001 processed_pseudogene Mus_musculus 1e-35 154
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 7e-34 148
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 1e-30 137
ENSMUST00000186496 RP23-464K22.5-001 processed_pseudogene Mus_musculus 2e-23 113
ENSMUST00000119196 Gm15981-001 processed_pseudogene Mus_musculus 9e-23 111
ENSMUST00000122308 Gm12443-001 processed_pseudogene Mus_musculus 2e-19 100
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 0.000000000000001 88
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000003 60

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