C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type III, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155838 Scn3a-003 ENSMUSG00000057182 10090 - 2:65493125-65498599 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000155838
Transcript ID Liver
ENSMUST00000155838 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CP CIL_0006CP_0002 CGP 2:65316430-65567627
CIL_0006CO CIL_0006CO_0002 CGP 2:65457118-65767447

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 407
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 407
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 344
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 342
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 342
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 1037
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 484
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 619
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 1037
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 619
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 619
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 1037
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 484
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 484
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 619
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 1037

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