C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type IV, alpha, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000106534 scn4aa-001 ENSDARG00000008797 7955 - 12:5964503-5988747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000106534
Transcript ID Brain Kidney Muscle
ENSDART00000106534 0.024±0.01 0.158±0.01 2.684±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 481
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 784
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 542
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 784
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 412
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 412
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 481
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 542
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 542
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 542
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 412
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 784
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 784
ENSMUST00000155838 Scn3a-003 processed_transcript Mus_musculus 0 344
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 484
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 412
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 412
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 619
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 619
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 427
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 619
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 427
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 970
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 619
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 619
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 619
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 619
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 407
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 959

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