C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VIII, alpha b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000151299 scn8ab-001 ENSDARG00000018032 7955 - 6:39323306-39420054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverENSDART00000151299
Transcript ID Kidney Liver
ENSDART00000151299 0.131±0.02 0.050±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 556
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 1777
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 425
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 647
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 569
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 2468
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 569
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 516
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 516
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 1777
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 647
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 2440
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 1299
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 2468
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 516
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 569
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 569
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 425
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 425
ENSMUST00000155838 Scn3a-003 processed_transcript Mus_musculus 0 407
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 516
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 516
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 595
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 475
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 976
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 399
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 2405
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 1297
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 595
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 976
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 976
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 595
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 475
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 475
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 399
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 399
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 976
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 399
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 399
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 562
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 595
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 399
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 399
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 399
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 399
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 399
ENST00000473295 SCN1A-005 retained_intron Homo_sapiens 0 224
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 1297
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 569
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 562
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 2405

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