C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406019 HMGB1P13-001 ENSG00000220557 9606 - 6:132868218-132868859 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000406019
Transcript ID Muscle
ENST00000406019 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014O CIL_00014O_0002 CGP 6:132814441-133532120

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 599
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 593
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 588
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 588
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 588
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 448
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000119716 Gm13170-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000119277 Gm13155-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000121570 Gm8178-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000120969 Gm13153-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 394
ENSMUST00000119920 Gm13239-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 340
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 309
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 209

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