C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395823 HMGB1P10-001 ENSG00000213707 9606 + 22:26560526-26561088 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000395823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000395823 0.133±0.00 0.144±0.00 0.167±0.00 0.045±0.02 0.058±0.00 0.510±0.48 0.027±0.00 1.330±0.00 0.150±0.00 0.716±0.64 0.177±0.13 0.094±0.00 0.248±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 730
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 725
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 725
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 725
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 719
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 719
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 621
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 601
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119716 Gm13170-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000119277 Gm13155-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000121570 Gm8178-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000120969 Gm13153-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 486
ENSMUST00000119920 Gm13239-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 392
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 364
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 7e-37 158

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