C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 16470
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182456 Gm16470-001 ENSMUSG00000098091 10090 + 19:40212382-40213379 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182456 0.449±0.34 0.148±0.10 0.126±0.03 0.635±0.50 1.711±1.37 0.106±0.04 0.509±0.27 0.287±0.28 0.338±0.39 0.037±0.00 0.306±0.12 0.159±0.15 0.570±0.66 0.046±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1125
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 878
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1123
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1125
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1125
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 520
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 907
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 867
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 968
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 837
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 309
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 569
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 832
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 782
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1020
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 870
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 664
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 536
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 695
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 791
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 669
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 662
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 673
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 2e-30 134
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 505
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 774
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1070
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 551
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 878
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 878
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 617
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 800
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 832
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 830
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 931
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 628
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 477
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 839
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 878
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 917
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 580
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 802
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 551
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1014

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