C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309268 EEF1A1-009 ENSG00000156508 9606 - 6:73517515-73521588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309268 307.655±0.00 228.020±0.00 186.694±0.00 154.820±9.28 333.613±143.17 539.682±114.59 53.488±0.00 241.310±80.06 637.844±0.00 468.401±0.00 40.776±0.00 404.623±136.81 334.313±0.00 172.107±85.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PO CIL_0006PO_0001 CGP 6:73461578-73523797
CIL_0006PR CIL_0006PR_0001 CGP 6:73515750-73654155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 TAS:IEA translation elongation factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA:TAS GTP binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 ISS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005853 TAS eukaryotic translation elongation factor 1 complex
GO:0006184 IEA GTP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006412 TAS translation
GO:0006414 TAS:IEA translational elongation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0019901 IPI protein kinase binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071364 IDA cellular response to epidermal growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042235 Eef1a1-001 protein_coding Mus_musculus 0 2468
ENSMUST00000118928 Gm13456-001 processed_pseudogene Mus_musculus 0 1805
ENSMUST00000187672 RP23-307G23.3-001 processed_pseudogene Mus_musculus 0 1794
ENSMUST00000118650 Gm6767-001 processed_pseudogene Mus_musculus 0 1703
ENSMUST00000161562 Gm5822-001 processed_pseudogene Mus_musculus 0 1624
ENSMUST00000121596 Gm12912-001 processed_pseudogene Mus_musculus 0 1600
ENSMUST00000167498 Gm6548-001 processed_pseudogene Mus_musculus 0 1502
ENSMUST00000144523 Eef1a1-005 retained_intron Mus_musculus 0 1125
ENSMUST00000154207 Eef1a1-008 protein_coding Mus_musculus 0 1092
ENSMUST00000126614 Eef1a1-006 retained_intron Mus_musculus 0 922
ENSMUST00000187291 RP23-465C10.2-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000156988 Eef1a1-003 protein_coding Mus_musculus 0 811
ENSMUST00000189839 RP24-342F15.1-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000150960 Eef1a1-002 retained_intron Mus_musculus 0 730
ENSMUST00000143570 Eef1a1-007 processed_transcript Mus_musculus 0 601
ENSMUST00000129380 Eef1a1-004 retained_intron Mus_musculus 0 568
ENSMUST00000189923 RP23-478L14.1-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000162135 Gm15796-001 processed_pseudogene Mus_musculus 0 278

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