C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 alpha 1 pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325349 EEF1A1P16-001 ENSG00000213235 9606 + 12:16990670-16992083 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000325349
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000325349 0.444±0.00 0.534±0.00 0.169±0.00 0.395±0.00 0.428±0.00 0.033±0.00 0.309±0.00 0.095±0.00 0.582±0.00 0.210±0.00 0.104±0.09 0.206±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388
CIL_0007TA CIL_0007TA_0001 VISTA 12:16580382-17181483
CIL_00091U CIL_00091U_0001 VISTA 12:16718777-17321842
CIL_000901 CIL_000901_0001 VISTA 12:16858850-17460825

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042235 Eef1a1-001 protein_coding Mus_musculus 0 1563
ENSMUST00000187672 RP23-307G23.3-001 processed_pseudogene Mus_musculus 0 1450
ENSMUST00000118928 Gm13456-001 processed_pseudogene Mus_musculus 0 1423
ENSMUST00000118650 Gm6767-001 processed_pseudogene Mus_musculus 0 1328
ENSMUST00000161562 Gm5822-001 processed_pseudogene Mus_musculus 0 1264
ENSMUST00000167498 Gm6548-001 processed_pseudogene Mus_musculus 0 1230
ENSMUST00000121596 Gm12912-001 processed_pseudogene Mus_musculus 0 1219
ENSMUST00000144523 Eef1a1-005 retained_intron Mus_musculus 0 856
ENSMUST00000154207 Eef1a1-008 protein_coding Mus_musculus 0 843
ENSDART00000128726 eef1a1a-001 protein_coding Danio_rerio 0 754
ENSDART00000129362 eef1a1l1-203 protein_coding Danio_rerio 0 749
ENSMUST00000126614 Eef1a1-006 retained_intron Mus_musculus 0 736
ENSDART00000039129 eef1a1l1-202 protein_coding Danio_rerio 0 734
ENSMUST00000156988 Eef1a1-003 protein_coding Mus_musculus 0 654
ENSMUST00000150960 Eef1a1-002 retained_intron Mus_musculus 0 558
ENSMUST00000143570 Eef1a1-007 processed_transcript Mus_musculus 0 551
ENSMUST00000129380 Eef1a1-004 retained_intron Mus_musculus 0 438
ENSDART00000016121 eef1a1a-002 protein_coding Danio_rerio 0 425

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