C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 8 like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000040204 tuba8l2-001 ENSDARG00000031164 7955 + 1:4291630-4308270 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000040204
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000040204 18.273±10.16 153.597±45.69 3.716±0.73 10.847±0.00 495.948±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 1022
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1170
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1186
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 852
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1160
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1138
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 717
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 209
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 303
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1179
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1155
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 1057
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1061
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1175
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 534
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 1053
ENST00000442868 RP11-480I12.5-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 420
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1059
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 896
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 791
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 675
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1151
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 946
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1151

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