C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032233 Tuba8-001 ENSMUSG00000030137 10090 + 6:121210734-121226854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032233 0.490±0.08 1.104±0.20 1.320±0.34 0.661±0.85 4.013±2.15 0.048±0.02 23.816±2.46 0.625±0.26 0.847±0.15 3.041±1.48 44.170±21.53 0.289±0.12 0.475±0.32 36.560±19.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EU CIL_0005EU_0002 CGP 6:121183667-121226854
CIL_0005EW CIL_0005EW_0002 CGP 6:121210734-121270916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISA microtubule cytoskeleton organization
GO:0003924 IEA GTPase activity
GO:0005200 ISA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 ISA microtubule
GO:0006184 IEA GTP catabolic process
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1022
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1013
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 996
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 990
ENSDART00000016360 protein_coding Danio_rerio 0 974
ENSDART00000102713 protein_coding Danio_rerio 0 974
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 968
ENST00000292748 TUBA3FP-002 processed_transcript Homo_sapiens 0 412
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 939
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 941
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 965
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1040
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 1722
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1046
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1816
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1016
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1022
ENST00000409047 TUBA3D-003 processed_transcript Homo_sapiens 0 390
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 1681
ENST00000422086 TUBA3FP-003 processed_transcript Homo_sapiens 0 412
ENST00000426208 TUBA8-004 protein_coding Homo_sapiens 0 414
ENST00000442739 TUBA3FP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 560
ENST00000442868 RP11-480I12.5-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 569
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1714
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 965
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 5e-16 90
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1016
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 436
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 2e-39 167
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 191
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 3e-16 90
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 228
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 939
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0.000000000000001 88
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 7e-19 99
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 6e-33 145
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 195
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 4e-20 102
ENST00000608634 TUBA8-005 protein_coding Homo_sapiens 0 610

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