C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404609 RP3-393E18.1-001 ENSG00000216480 9606 - 6:159526062-159526527 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000404609
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000404609 0.307±0.00 0.800±0.00 0.231±0.00 0.223±0.00 0.297±0.00 0.194±0.00 0.059±0.00 0.340±0.00 0.383±0.00 0.204±0.16 0.375±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 521
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 521
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 521
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 477
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 333
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 231
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1.99993e-41 172
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 1e-18 97

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