C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11975
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118772 Gm11975-001 ENSMUSG00000084231 10090 - 11:6559023-6559503 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000118772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118772 0.762±0.32 0.292±0.00 0.141±0.01 0.329±0.11 0.752±0.24 0.425±0.14 0.296±0.14 0.195±0.09 0.148±0.10 0.328±0.04 0.594±0.13 0.308±0.09 0.109±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SD CIL_0000SD_0002 CGP 11:6506548-6596744
CIL_0000S8 CIL_0000S8_0002 CGP 11:6546887-6606053

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 520
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 520
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 520
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 520
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 514
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 0 442
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 470
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000439130 RP11-244N20.7-001 processed_pseudogene Homo_sapiens 0 388
ENST00000442539 RPL21P135-001 processed_pseudogene Homo_sapiens 3e-27 126
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 475
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 259
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 492
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 492
ENST00000465598 RPL21P71-001 processed_pseudogene Homo_sapiens 6e-22 108
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 298
ENST00000471393 RP11-400K9.1-001 processed_pseudogene Homo_sapiens 0 379
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 486
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 0 459
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 470
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 440
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 8e-21 104
ENST00000485147 RP11-407P2.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 501
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 481
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 503
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 412
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 0 466
ENST00000510061 AC006445.7-001 processed_pseudogene Homo_sapiens 0 337
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 0 235
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 0 425
ENST00000559810 RPL21P12-001 processed_pseudogene Homo_sapiens 0 313
ENST00000610672 MED22-007 protein_coding Homo_sapiens 0 388

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