C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000002595 rpl21-001 ENSDARG00000010516 7955 + 24:22229602-22233473 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000002595
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000002595 175.860±177.23 772.510±852.49 511.227±719.39 848.072±0.00 975.831±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0001 CGP 24:22208268-22233473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 272
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 272
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 272
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 272
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 267
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 272
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 239
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 239
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 244
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 7e-22 108
ENST00000471393 RP11-400K9.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 244
ENST00000482585 CTD-2036J7.1-001 unprocessed_pseudogene Homo_sapiens 2e-22 110
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 257
ENST00000485756 RPL21-010 retained_intron Homo_sapiens 0 211
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 248
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 250
ENST00000490908 RPL21P127-001 processed_pseudogene Homo_sapiens 0 222
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 244
ENST00000494303 RP11-366M4.1-001 processed_pseudogene Homo_sapiens 0 224
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 228
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 0 224
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 0 200

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