C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 63
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427917 HNRNPA1P63-001 ENSG00000227453 9606 + 1:54536796-54537758 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMusclePlacentaENST00000427917
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Placenta
ENST00000427917 0.013±0.00 0.084±0.00 0.028±0.00 0.042±0.00 0.025±0.00 0.013±0.00 0.014±0.00 0.012±0.00 0.037±0.00 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0001 VISTA 1:54159373-54763153
CIL_00005A CIL_00005A_0002 CGP 1:54225432-54639192

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1147
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1146
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1131
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1086
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1072
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1068
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 907
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 893
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 891
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 891
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 852
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 774
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 449

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