C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440453 RP11-170J3.2-001 ENSG00000228657 9606 - 10:102572757-102573225 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyMuscleOvaryTestisENST00000440453
Transcript ID Brain Colon Kidney Muscle Ovary Testis
ENST00000440453 0.109±0.00 0.240±0.00 0.108±0.00 0.153±0.00 0.073±0.02 0.250±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0001 VISTA 10:102469546-103070739
CIL_0005WM CIL_0005WM_0001 CGP 10:102479229-102633535
CIL_00065X CIL_00065X_0001 CGP 10:102503987-102658407

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 499
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 494
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 484
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 479
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 472
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 355
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000117773 Gm15215-001 processed_pseudogene Mus_musculus 0 250

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