C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440699 HNRNPA1P30-001 ENSG00000233780 9606 - 13:20948294-20949599 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungTestisENST00000440699
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Testis
ENST00000440699 0.052±0.00 0.055±0.00 0.014±0.00 0.055±0.00 0.139±0.00 0.122±0.00 0.073±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SQ CIL_0003SQ_0001 CGP 13:20777329-21061547

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1018
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1018
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 977
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 933
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 787
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 787
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 641
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 1e-36 158

Loading