C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444886 HNRNPA1P15-001 ENSG00000214761 9606 + 9:125595669-125596628 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000444886
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000444886 0.028±0.00 0.121±0.00 0.322±0.00 0.054±0.01 0.104±0.00 0.089±0.05 0.284±0.00 0.671±0.00 0.132±0.12 0.097±0.00 21.944±14.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080V CIL_00080V_0001 VISTA 9:125333480-125934659
CIL_0008LX CIL_0008LX_0001 VISTA 9:125343868-125945374
CIL_0007LN CIL_0007LN_0001 UCNEbase 9:125397521-126491100
CIL_0008Q0 CIL_0008Q0_0001 VISTA 9:125454655-126056093
CIL_0008GT CIL_0008GT_0001 VISTA 9:125458713-126060374
CIL_000961 CIL_000961_0001 VISTA 9:125460596-126063163
CIL_0008R5 CIL_0008R5_0001 VISTA 9:125463069-126064935
CIL_000848 CIL_000848_0001 VISTA 9:125521677-126122201
CIL_0008I6 CIL_0008I6_0001 VISTA 9:125544240-126146071
CIL_00086D CIL_00086D_0001 VISTA 9:125577886-126179048
CIL_0007YW CIL_0007YW_0001 VISTA 9:125583183-126184818

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1110
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1109
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1081
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1050
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1035
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1020
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 865
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 865
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 826
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 747
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 891

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