C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454001 RPSAP54-001 ENSG00000213621 9606 + 13:20961310-20962195 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000454001
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000454001 0.387±0.00 0.865±0.00 0.292±0.00 0.181±0.12 0.392±0.00 0.130±0.00 0.210±0.00 0.129±0.00 0.655±0.00 0.105±0.00 0.177±0.12 0.131±0.01 0.162±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SQ CIL_0003SQ_0001 CGP 13:20777329-21061547

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1086
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1075
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 1050
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 974
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 968
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 915
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 706
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 649
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 617

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