C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7516
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186198 RP23-2I19.1-001 ENSMUSG00000100561 10090 + 1:81797241-81797946 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverOvaryPlacentaTestisENSMUST00000186198
Transcript ID Adipose Breast Colon Liver Ovary Placenta Testis
ENSMUST00000186198 0.044±0.00 0.110±0.05 0.083±0.00 0.010±0.00 0.078±0.00 0.043±0.04 0.257±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AN CIL_0004AN_0003 CGP 1:81076950-82291416
CIL_00083P CIL_00083P_0002 VISTA 1:81220227-81822255

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 444
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 730
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 728
ENST00000401872 RP11-506B6.3-001 processed_pseudogene Homo_sapiens 0 593
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 640
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 621
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 462
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 562
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 706
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 652
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 651
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 364
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 634
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 706
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 560
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 706
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 647
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 658
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 688
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 632
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 429
ENST00000444512 RPSA-009 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 566
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 664
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 717
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 706
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 424
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 671
ENST00000461543 AC016737.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 708
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 507
ENST00000467439 RP11-162K6.1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 287
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 658
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 730
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 680
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 630
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 593
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 656
ENST00000490490 RPSA-010 processed_transcript Homo_sapiens 0 279
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 507
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 340
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 728
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 562
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 556

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