C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121691 Rpsa-ps4-001 ENSMUSG00000081076 10090 - 11:33038816-33039703 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121691 5.774±2.16 0.807±0.23 0.737±0.53 0.335±0.20 8.102±2.08 3.979±1.71 1.871±0.28 1.910±0.74 1.420±2.63 3.777±0.54 0.125±0.00 8.598±5.70 0.188±0.12 0.640±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 675
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 1051
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 1046
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 752
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 918
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 931
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 686
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 835
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 813
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 459
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 678
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 926
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 399
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 942
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 1024
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 835
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 741
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 974
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 880
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 992
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 928
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 691
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 817
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 422
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 922
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 652
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 990
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 1027
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 686
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 974
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1027
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 785
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 355
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 887
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 874
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 1024
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 889
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 935
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 867
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 963
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 785
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 346
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 1046
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 813
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 808

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