C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191040 Rpsa-ps1-001 ENSMUSG00000102117 10090 + 1:163623793-163624678 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000191040
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000191040 5.631±2.87 0.130±0.10 2.183±1.47 1.903±0.11 2.148±0.45 0.751±0.57 1.202±0.85 0.536±0.24 1.220±1.81 1.568±0.78 0.109±0.04 11.677±11.37 0.115±0.05 0.493±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093H CIL_00093H_0002 VISTA 1:163597221-164199818

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 619
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 985
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 979
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 841
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 870
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 660
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 785
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 769
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 957
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 667
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 869
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 374
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 870
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 942
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 773
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 946
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 686
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 913
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 819
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 928
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 852
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 619
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 785
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 363
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 616
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 946
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 974
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 614
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 902
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 941
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 737
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 350
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 822
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 835
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 952
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 824
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 863
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 822
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 907
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 737
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 329
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 979
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 769
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 763

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