C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057740 Rpsa-ps10-201 ENSMUSG00000047676 10090 - 3:150072590-150073620 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057740 64.067±15.77 5.135±3.25 7.085±2.05 11.655±9.15 91.041±22.73 38.715±19.08 18.196±3.89 16.150±9.80 12.159±15.82 32.225±3.06 1.695±0.22 102.636±81.66 26.007±28.78 7.529±2.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 693
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 1203
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 1158
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 802
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 941
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 987
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 863
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 728
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 987
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 405
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 987
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 880
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 1057
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 774
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 1033
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 913
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 1134
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 977
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 784
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 878
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 972
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 691
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 1046
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 1086
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 789
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 1053
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1061
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 830
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 411
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 926
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 935
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 1074
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 939
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 985
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 928
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 917
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 335
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 1208
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 863
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 857

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