C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118446 Rpsa-ps11-001 ENSMUSG00000082978 10090 - 4:59162268-59163156 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118446 0.101±0.06 0.063±0.00 0.015±0.00 0.038±0.02 0.159±0.12 0.079±0.03 0.080±0.04 0.066±0.00 0.062±0.05 0.062±0.01 0.085±0.03 0.225±0.13 0.091±0.06 0.327±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005XB CIL_0005XB_0002 CGP 4:59043753-59222833

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 985
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 979
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 819
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 881
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 654
ENST00000414293 RP11-182B22.2-001 transcribed_processed_pseudogene Homo_sapiens 0 734
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 771
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 736
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 952
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 640
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 845
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 375
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 870
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 767
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 946
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 813
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 928
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 852
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 625
ENST00000444512 RPSA-009 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 758
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 355
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 857
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 604
ENST00000447583 RP11-533E19.3-001 processed_pseudogene Homo_sapiens 0 555
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 929
ENST00000453374 RP11-179G5.1-001 processed_pseudogene Homo_sapiens 0 905
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 968
ENST00000456555 AC011322.1-001 transcribed_processed_pseudogene Homo_sapiens 0 828
ENST00000456871 RP11-398C13.2-001 processed_pseudogene Homo_sapiens 0 736
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 619
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 902
ENST00000461543 AC016737.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 941
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 704
ENST00000466509 RP11-403P13.1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 333
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 789
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 830
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 946
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 835
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 863
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 800
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 896
ENST00000490490 RPSA-010 processed_transcript Homo_sapiens 0 324
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 704
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 302
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 979
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 736
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 730
ENST00000522496 RP11-117L6.1-001 processed_pseudogene Homo_sapiens 0 431

Loading