C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059546 Rpsa-ps2-201 ENSMUSG00000045055 10090 - 10:128776742-128777251 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059546 3.960±0.79 0.857±0.49 11.713±11.43 13.878±2.41 3.725±1.04 0.807±0.43 0.640±0.25 0.925±0.56 6.008±11.73 1.315±0.22 0.206±0.11 6.622±4.19 0.101±0.01 0.282±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 390
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 645
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 645
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 490
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 580
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 468
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 518
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 628
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 324
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 243
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 586
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 617
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 584
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 628
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 595
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 573
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 586
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 555
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 623
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 549
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 416
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 422
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 606
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 649
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 623
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 645
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 632
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 479
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 542
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 468
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 628
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 579
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 479
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 311
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 645

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