C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120702 Rpsa-ps9-001 ENSMUSG00000082895 10090 + 2:28477166-28478050 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120702 0.293±0.15 0.453±0.10 0.551±0.14 1.303±1.51 0.615±0.24 0.312±0.08 0.218±0.08 0.178±0.07 1.758±2.83 0.119±0.02 0.164±0.14 0.590±0.42 0.360±0.24 0.948±0.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 651
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 1072
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 1066
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 778
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 952
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 869
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 828
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 1027
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 695
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 948
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 405
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 952
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 1029
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 843
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 1022
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 739
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 994
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 883
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 1014
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 950
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 689
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 856
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 433
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 950
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 641
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 1005
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 1050
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 684
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 983
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1027
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 802
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 375
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 887
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 896
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 1038
ENST00000481955 RP11-361A21.1-001 processed_pseudogene Homo_sapiens 0 573
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 905
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 961
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 893
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 983
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 802
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 340
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 1066
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 828
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 822

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