C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000074671 gria2b-002 ENSDARG00000052765 7955 + 14:36968780-37032629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000074671
Transcript ID Brain Kidney Muscle
ENSDART00000074671 37.908±11.10 0.161±0.12 1.519±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DX CIL_0006DX_0001 CGP 14:36912246-37033972
CIL_00007X CIL_00007X_0001 CGP 14:36968744-37103245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 941
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 1631
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 896
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 1448
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 859
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 750
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 283
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 859
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 1598
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 885
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 1415
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 0 1264
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 905
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 1415
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 872
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 337
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 1415
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 885
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 885
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 885
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 905
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 296
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 887
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 773
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 887

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