C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488409 RPL29P2-001 ENSG00000240480 9606 + 17:7754394-7754853 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryTestisENST00000488409
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Testis
ENST00000488409 0.442±0.00 0.095±0.00 0.160±0.00 0.204±0.00 0.326±0.00 0.021±0.00 0.047±0.00 0.948±0.00 0.085±0.02 0.215±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037F CIL_00037F_0002 CGP 17:7717354-7854796

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 294
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 294
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 278
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 270
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 267
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000117685 Gm11270-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 250
ENSMUST00000091759 Gm7731-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000120582 Gm15467-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 217
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 1e-33 147

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