C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000111140 RPL29-201 ENSDARG00000077717 7955 - 11:1361347-1365669 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000111140
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000111140 352.632±43.10 1014.800±717.56 659.142±634.78 408.822±0.00 938.562±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 202
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 202
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 1e-29 134
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 202
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 202
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 3e-35 152
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 207
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 1.99965e-42 176
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0.000000000000001 88
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 1.99965e-42 176
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 207
ENST00000470368 RPL29P30-002 processed_transcript Homo_sapiens 2e-38 163
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 207
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 207
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0.000000000000001 88
ENST00000484381 RPL29P30-001 transcribed_processed_pseudogene Homo_sapiens 5e-38 161
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 1e-33 147
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 207
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 207
ENST00000496414 RPL29P30-003 processed_transcript Homo_sapiens 2e-38 163
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 2e-33 147

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