C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3550
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105038 Gm3550-201 ENSMUSG00000078240 10090 + 18:34736359-34738014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105038 0.054±0.01 0.164±0.10 0.023±0.00 0.152±0.00 0.101±0.04 0.112±0.05 0.044±0.02 0.031±0.01 0.274±0.23 0.058±0.04 0.013±0.00 0.130±0.08 0.169±0.17 0.177±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D8 CIL_0005D8_0002 CGP 18:34689903-34751533

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 398
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 285
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 276
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 213
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 189
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 268
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 364
ENST00000470368 RPL29P30-002 processed_transcript Homo_sapiens 0 268
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 364
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 370
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 0 204
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 207
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 1e-24 117
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 274
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 250
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 364
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 359
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 364
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000496414 RPL29P30-003 processed_transcript Homo_sapiens 0 261
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 263

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