C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4889
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075321 Gm4889-201 ENSMUSG00000056797 10090 + 8:34327910-34328353 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryPlacentaTestisENSMUST00000075321
Transcript ID Adrenal Breast Liver Ovary Placenta Testis
ENSMUST00000075321 0.246±0.00 0.148±0.00 0.078±0.00 0.606±0.00 0.121±0.08 1.052±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0002 VISTA 8:33748285-34351942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 329
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 285
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 285
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 287
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 202
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 283
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 329
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 329
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 329
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 4e-31 139
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 8.40779e-45 183
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 257
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 270
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 329
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 320
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 329
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 270

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