C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 10913
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133732 Gm10913-001 ENSMUSG00000078097 10090 + 16:36209277-36209739 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000133732
Transcript ID Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133732 0.315±0.24 0.110±0.00 0.119±0.00 0.244±0.15 0.127±0.00 0.205±0.08 0.395±0.18 0.441±0.50 0.276±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QT CIL_0002QT_0009 CGP 16:36184212-36217788

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 9.80909e-45 183
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 363
ENST00000407695 RP1-253B10.1-001 processed_pseudogene Homo_sapiens 0.00000000000003 82
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 298
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 230
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 200
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 285
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 363
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 363
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 363
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 4.00001e-41 172
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 207
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.0000000001 71
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 276
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 263
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 363
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 351
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 363
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 217
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 263

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