C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150576 Rpl29-001 ENSMUSG00000048758 10090 + 9:106429454-106431568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150576 138.370±39.77 71.678±4.03 380.579±17.58 178.159±113.27 102.941±33.84 175.068±32.90 87.187±21.25 167.486±21.85 263.651±203.37 101.511±8.65 110.065±7.47 152.757±46.53 220.146±169.13 117.132±53.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NT CIL_0008NT_0002 VISTA 9:106082995-106685663
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 0 202
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 477
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 331
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 318
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 248
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 213
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 296
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 409
ENST00000470368 RPL29P30-002 processed_transcript Homo_sapiens 0 318
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 409
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 394
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 414
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 0 209
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 224
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 1e-24 117
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 296
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 294
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 409
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 409
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 409
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 217
ENST00000496414 RPL29P30-003 processed_transcript Homo_sapiens 0 311
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 307
ENST00000559892 RP11-138H8.4-001 processed_pseudogene Homo_sapiens 4e-34 148

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