C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8210
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178557 Gm8210-001 ENSMUSG00000094497 10090 + 1:43189156-43189638 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSMUST00000178557
Transcript ID Brain Liver
ENSMUST00000178557 7.981±0.00 19.793±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096O CIL_00096O_0002 VISTA 1:42588323-43189246
CIL_00010E CIL_00010E_0002 CGP 1:43098710-43196984
CIL_00010G CIL_00010G_0002 CGP 1:43123074-43570515

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 0 195
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 377
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 302
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 289
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 211
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 291
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 377
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 377
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 377
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 7e-39 165
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 294
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 224
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.0000000004 69
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 279
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 283
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 377
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 366
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 377
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 211
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 283

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