C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511084 CTB-85P21.1-001 ENSG00000213488 9606 + 5:144522140-144522988 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLungOvaryENST00000511084
Transcript ID Adrenal Breast Lung Ovary
ENST00000511084 0.023±0.00 0.066±0.00 0.039±0.00 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AH CIL_0001AH_0001 CGP 5:144170832-145835369

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 198
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 198
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 198
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 198
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 198
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 198
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 4.06377e-44 182
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 5e-38 161
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 2e-31 139
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 4e-29 132
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 3e-20 102
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 3e-20 102
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 3e-20 102
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 3e-20 102

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