C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075549 Rpl9-ps4-201 ENSMUSG00000094989 10090 - 13:72454762-72455340 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075549
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075549 0.605±0.32 0.443±0.20 4.610±3.82 2.753±2.26 0.636±0.30 0.477±0.15 0.452±0.14 0.304±0.18 4.211±6.74 0.242±0.15 0.236±0.11 0.510±0.32 0.139±0.08 0.238±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0003 UCNEbase 13:71053181-73117527
CIL_0008M2 CIL_0008M2_0002 VISTA 13:71964953-72566324
CIL_0008ZM CIL_0008ZM_0002 VISTA 13:71988437-72589483
CIL_00082F CIL_00082F_0002 VISTA 13:71997848-72599335
CIL_00098K CIL_00098K_0002 VISTA 13:72002372-72603422
CIL_0008YQ CIL_0008YQ_0002 VISTA 13:72005068-72605867

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 741
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 741
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 747
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 503
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 265
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 446
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 433
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 741
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 625
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 630
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 662
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 747
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 6e-37 156
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 569
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 673
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 435
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 411
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 643
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 675
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 643
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 248
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 675
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 499
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 198
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 250
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 433
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 673

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