C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119147 Rpl9-ps3-001 ENSMUSG00000085718 10090 + 11:53501184-53501759 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMusclePlacentaENSMUST00000119147
Transcript ID Bladder Brain Heart Liver Muscle Placenta
ENSMUST00000119147 0.298±0.04 0.061±0.00 0.071±0.00 0.044±0.00 0.112±0.00 0.191±0.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 680
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 680
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 686
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 481
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 416
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 680
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 614
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 584
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 686
ENST00000475906 RPL9P3-001 processed_pseudogene Homo_sapiens 0 617
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 617
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 440
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 577
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 619
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 603
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 8e-20 100
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 619
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 477
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 394
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 617
ENST00000591685 RPL9P29-001 processed_pseudogene Homo_sapiens 0 255

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