C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9, pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078034 Rpl9-ps6-201 ENSMUSG00000062456 10090 - 19:32465885-32466575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078034 2.088±0.35 1.377±0.40 6.931±1.74 4.517±0.93 1.199±0.54 2.788±2.23 1.189±0.42 2.830±1.29 6.803±7.11 0.953±0.23 0.344±0.13 1.354±0.88 0.524±0.49 1.107±0.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IC structural constituent of ribosome
GO:0006412 IC translation
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 761
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 741
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 750
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 523
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 457
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 433
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 741
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 625
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 630
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 673
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 747
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 6e-37 156
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 569
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 673
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 429
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 411
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 664
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 675
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 643
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 248
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 675
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 520
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 198
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 250
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 427
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 682

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