C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515536 RP11-166J22.1-001 ENSG00000249851 9606 - 5:138266996-138267757 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D9 CIL_0005D9_0001 CGP 5:138187648-138274671
CIL_0005D8 CIL_0005D8_0001 CGP 5:138252379-138338355

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 398
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 398
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 296
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000119143 Gm15206-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000181799 Gm8649-001 processed_pseudogene Mus_musculus 6e-37 158

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