C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 29228
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185489 RP23-125B4.3-001 ENSMUSG00000101682 10090 + 1:33482101-33482518 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverLungOvaryPlacentaENSMUST00000185489
Transcript ID Bladder Brain Breast Liver Lung Ovary Placenta
ENSMUST00000185489 0.131±0.00 0.167±0.00 0.273±0.10 0.304±0.14 0.191±0.00 0.608±0.04 0.100±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 438
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 438
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 438
ENST00000427962 RP11-235D19.2-001 processed_pseudogene Homo_sapiens 0 243
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 350
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 399
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 0 303
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 254
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 361
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 401
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 3e-26 122
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 265
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 438
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 350
ENST00000498403 RP11-1070A24.1-001 processed_pseudogene Homo_sapiens 0 222
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 438

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