C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8317
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121261 Gm8317-001 ENSMUSG00000084276 10090 - 14:45858076-45858546 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainOvaryPlacentaENSMUST00000121261
Transcript ID Bladder Brain Ovary Placenta
ENSMUST00000121261 0.024±0.00 0.077±0.00 0.075±0.00 0.322±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086A CIL_00086A_0002 VISTA 14:45525150-46127947
CIL_0007SB CIL_0007SB_0002 VISTA 14:45643840-46245127
CIL_0008S4 CIL_0008S4_0002 VISTA 14:45717040-46320810

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 608
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 608
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 510
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 608
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 492
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 568
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 0 398
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 416
ENST00000452665 RP11-423E7.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 470
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 545
ENST00000463344 RP13-926M18.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 0 211
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 427
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 617
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 252
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 617
ENST00000597285 CTD-3214H19.12-001 processed_pseudogene Homo_sapiens 0 350
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 0 252

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