C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136329 Tuba1a-003 ENSMUSG00000072235 10090 - 15:98950258-98953551 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverLungTestisENSMUST00000136329
Transcript ID Adipose Bladder Breast Heart Liver Lung Testis
ENSMUST00000136329 103.713±31.22 20.086±0.00 262.311±0.00 26.301±2.79 3.847±0.00 67.125±1.84 6.006±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0002 CGP 15:98931425-98953551

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 961
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 961
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 933
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 771
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 771
ENSDART00000115157 tuba4l-201 protein_coding Danio_rerio 0 717
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 717
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 944
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1249
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1249
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1216
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1232
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1232
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 944
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 590
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 667
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 741
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 741
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 734
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 902
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 324
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 1112
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1216
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 628
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1232
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 658
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 9e-22 108
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1216
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 9e-22 108
ENST00000549554 TUBA1C-005 processed_transcript Homo_sapiens 7e-22 108
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0.000000000000004 86
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 9e-22 108
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 477
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1249
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 2e-23 113
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1216
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 206
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 477
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 3e-29 132
ENST00000611325 RP11-386G11.11-001 processed_pseudogene Homo_sapiens 0 244

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